Molecular characterization of a novel Conyza canadensis-infecting begomovirus in China

Phytopathology Research

Table 1 The region in the CoYVV genome corresponding to the recombination breakpoint detected by at least six different methods in the RDP4 package

Recombination breakpoint	Potential parent sequence^#		P-value	Methods used to detect recombination^*
Recombination breakpoint	Major	Minor	P-value	Methods used to detect recombination^*
2089–2677	TYLCVYnV (KU933255)	TYLCCNV (AM260701)	3.121 × 10⁻²⁵	R, G, B, M, C, S

R, RDP; G, GeneConv; B, Bootscan; M, MaxChi; , CHIMAERA; S, SiScan; 3S, 3SEQ; TYLCYnV, tomato yellow leaf curl Yunnan virus (GenBank Accession No. KU933255); TYLCCNV, tomato yellow leaf curl China virus (GenBank accession no. AM260701)
^#Major parent refers to the parental isolate that contributes a larger fraction of the recombined sequence as compared to the minor parent